PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487408
Common NameARALYDRAFT_487408
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 227aa    MW: 25492.8 Da    PI: 8.2225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487408genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055577123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ Cg+ F++   L  H+++H
   487408 55 YSCSFCGREFKSAQALGGHMNVH 77
             99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-65281No hitNo description
Gene3DG3DSA:3.30.160.602.3E-45379IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00175577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1545582IPR007087Zinc finger, C2H2
PfamPF139123.4E-65578IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMERGECLMS MKLRPMVTRP SSDGTLFWPF REERAFASAE EYGGGGACMW PPRSYSCSFC  60
GREFKSAQAL GGHMNVHRRD RARLKQQSLS PSSTDQATHP EYDRQQQVLD VGSKVLVQEE  120
TRKPNGTKRE ISDVCNNNVL ESSMQRYEHD NDEVKTDLSV GLLSSEFDPR KKQLIKGSSS  180
SWKRAKTDVA RFPMMLGLVI GVSKINGHHE ELDLELRLGA DPPKVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125077229superman protein
2l1o_A2e-125077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1073710.0AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds.
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankAY0888610.0AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873235.11e-170hypothetical protein ARALYDRAFT_487408
SwissprotQ9LHS91e-163RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLD7LZ351e-170D7LZ35_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__542__AT5G06070.11e-170(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-153C2H2 family protein